MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2023-01-29, 15:27 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1

General Statistics

Showing ²²¹/₂₂₁ rows and ⁴/₆ columns.

Sample Name	% Duplication	% > Q30	Mb Q30 bases	GC content	% PF	% Adapter
Sor-ABur_001-Ex1-6G-lcwgs-1-T	9.1%	96.1%	313.8	36.1%	95.3%	82.5%
Sor-ABur_002-Ex1-7G-lcwgs-1-T	7.4%	95.9%	164.3	34.7%	95.3%	82.8%
Sor-ABur_003-Ex1-8G-lcwgs-1-T	8.3%	96.3%	586.9	34.4%	97.6%	87.2%
Sor-ABur_004-Ex1-9G-lcwgs-1-T	8.8%	96.1%	339.5	35.3%	95.5%	82.4%
Sor-ABur_005-Ex1-10G-lcwgs-1-T	8.0%	96.0%	304.4	35.5%	93.6%	87.3%
Sor-ABur_006-Ex1-11G-lcwgs-1-T	8.9%	96.2%	508.1	35.5%	93.3%	84.6%
Sor-ABur_007-Ex1-12G-lcwgs-1-T	9.4%	96.2%	297.8	34.9%	96.6%	84.3%
Sor-ABur_008-Ex1-1H-lcwgs-1-T	8.0%	95.8%	445.5	35.1%	96.4%	81.3%
Sor-ABur_009-Ex1-2H-lcwgs-1-T	8.7%	96.2%	367.1	35.8%	94.2%	84.8%
Sor-ABur_010-Ex1-3H-lcwgs-1-T	8.5%	96.2%	229.0	35.3%	94.4%	86.6%
Sor-ABur_011-Ex1-4H-lcwgs-1-T	8.1%	96.6%	145.9	34.9%	94.2%	89.8%
Sor-ABur_012-Ex1-5H-lcwgs-1-T	8.4%	96.0%	153.0	34.4%	94.6%	79.6%
Sor-ABur_013-Ex1-6H-lcwgs-1-T	9.4%	95.5%	164.4	34.9%	94.9%	73.5%
Sor-ABur_014-Ex1-7H-lcwgs-1-T	8.3%	95.9%	321.3	35.1%	96.6%	79.4%
Sor-ABur_015-Ex1-8H-lcwgs-1-T	8.0%	96.5%	155.5	35.1%	97.2%	89.8%
Sor-ABur_016-Ex1-9H-lcwgs-1-T	8.9%	96.2%	183.8	34.4%	95.9%	83.7%
Sor-ACan_001-Ex1-1A-lcwgs-1-T	7.2%	94.7%	239.9	34.6%	95.5%	61.1%
Sor-ACan_002-Ex1-2A-lcwgs-1-T	7.8%	96.0%	224.9	34.9%	96.0%	83.9%
Sor-ACan_003-Ex1-3A-lcwgs-1-T	7.8%	95.6%	249.6	34.8%	96.1%	76.5%
Sor-ACan_004-Ex1-4A-lcwgs-1-T	7.8%	96.0%	597.1	35.1%	96.8%	81.8%
Sor-ACan_005-Ex1-5A-lcwgs-1-T	8.2%	96.0%	587.3	34.5%	96.9%	80.6%
Sor-ACan_006-Ex1-6A-lcwgs-1-T	9.1%	95.7%	1244.9	34.0%	97.4%	77.3%
Sor-ACan_007-Ex1-7A-lcwgs-1-T	7.8%	96.0%	724.5	34.8%	97.1%	80.9%
Sor-ACan_008-Ex1-8A-lcwgs-1-T	8.0%	95.9%	590.8	34.6%	96.9%	79.3%
Sor-ACan_009-Ex1-9A-lcwgs-1-T	8.5%	96.0%	358.7	35.2%	96.1%	80.1%
Sor-ACan_010-Ex1-10A-lcwgs-1-T	7.8%	96.0%	293.2	35.0%	93.9%	84.7%
Sor-ACan_011-Ex1-11A-lcwgs-1-T	8.2%	96.0%	209.0	35.1%	95.0%	82.7%
Sor-ACan_012-Ex1-12A-lcwgs-1-T	8.7%	96.1%	156.0	34.3%	94.3%	82.9%
Sor-ACan_013-Ex1-1B-lcwgs-1-T	0.5%	93.4%	9.7	36.9%	92.3%	68.2%
Sor-ACan_014-Ex1-2B-lcwgs-1-T	8.0%	96.5%	221.0	35.4%	97.4%	87.4%
Sor-ACan_015-Ex1-3B-lcwgs-1-T	7.9%	96.3%	289.8	34.7%	97.5%	87.8%
Sor-ACan_016-Ex1-4B-lcwgs-1-T	7.8%	96.4%	332.4	35.5%	97.8%	90.1%
Sor-ACan_017-Ex1-5B-lcwgs-1-T	7.8%	96.5%	196.1	35.7%	97.8%	88.8%
Sor-ACan_018-Ex1-6B-lcwgs-1-T	10.5%	94.7%	356.2	36.5%	96.2%	53.0%
Sor-ACan_019-Ex1-7B-lcwgs-1-T	1.2%	93.8%	10.9	38.7%	95.2%	70.8%
Sor-ACan_020-Ex1-8B-lcwgs-1-T	7.7%	96.5%	285.0	36.2%	96.2%	89.0%
Sor-ACan_021-Ex1-9B-lcwgs-1-T	14.2%	92.1%	115.3	59.4%	95.1%	16.3%
Sor-ACan_022-Ex1-10B-lcwgs-1-T	7.5%	95.8%	232.3	35.4%	92.5%	81.7%
Sor-ACan_023-Ex1-11B-lcwgs-1-T	8.5%	95.8%	391.1	35.7%	94.3%	79.0%
Sor-ACan_024-Ex1-12B-lcwgs-1-T	8.8%	95.6%	97.7	35.1%	96.9%	73.1%
Sor-ACan_025-Ex1-1C-lcwgs-1-T	7.3%	95.9%	659.2	35.6%	96.1%	80.1%
Sor-ACan_026-Ex1-2C-lcwgs-1-T	14.1%	92.0%	153.7	57.8%	94.8%	19.1%
Sor-ACan_027-Ex1-3C-lcwgs-1-T	8.0%	96.2%	390.4	35.3%	95.3%	86.5%
Sor-ACan_028-Ex1-4C-lcwgs-1-T	7.8%	96.5%	324.3	35.4%	97.4%	88.6%
Sor-ACan_029-Ex1-5C-lcwgs-1-T	8.3%	96.0%	728.1	35.9%	96.6%	78.9%
Sor-ACan_030-Ex1-6C-lcwgs-1-T	9.3%	95.3%	987.0	35.1%	96.7%	70.4%
Sor-ACan_031-Ex1-7C-lcwgs-1-T	8.1%	94.7%	678.8	34.9%	96.7%	54.4%
Sor-ACan_032-Ex1-8C-lcwgs-1-T	5.2%	92.9%	32.3	48.2%	95.0%	46.0%
Sor-ACan_033-Ex1-9C-lcwgs-1-T	8.6%	95.8%	404.6	35.5%	95.5%	75.9%
Sor-ACan_034-Ex1-10C-lcwgs-1-T	7.8%	96.0%	549.9	35.8%	94.1%	84.9%
Sor-ACan_035-Ex1-11C-lcwgs-1-T	9.5%	93.7%	44.5	43.2%	96.5%	45.6%
Sor-ACan_036-Ex1-12C-lcwgs-1-T	8.8%	96.0%	177.2	35.4%	95.3%	80.6%
Sor-ACan_037-Ex1-1D-lcwgs-1-T	7.5%	95.4%	327.4	34.6%	94.3%	75.9%
Sor-ACan_038-Ex1-2D-lcwgs-1-T	8.2%	95.8%	377.3	35.8%	93.1%	81.7%
Sor-ACan_039-Ex1-3D-lcwgs-1-T	7.8%	96.1%	275.7	36.0%	94.4%	85.3%
Sor-ACan_040-Ex1-4D-lcwgs-1-T	7.7%	96.1%	281.1	35.6%	94.5%	85.0%
Sor-ACan_041-Ex1-5D-lcwgs-1-T	8.3%	95.8%	271.3	35.6%	96.1%	75.1%
Sor-ACan_042-Ex1-6D-lcwgs-1-T	9.4%	95.2%	487.4	36.0%	96.1%	67.6%
Sor-ACan_043-Ex1-7D-lcwgs-1-T	7.9%	95.4%	741.2	34.2%	97.7%	76.2%
Sor-ACan_044-Ex1-8D-lcwgs-1-T	6.9%	95.8%	89.2	36.1%	95.8%	79.5%
Sor-ACan_045-Ex1-9D-lcwgs-1-T	8.7%	95.6%	234.3	35.9%	97.2%	72.6%
Sor-ACan_046-Ex1-10D-lcwgs-1-T	10.6%	91.7%	61.2	56.8%	95.1%	18.7%
Sor-ACan_047-Ex1-11D-lcwgs-1-T	8.5%	96.4%	424.7	35.8%	96.5%	89.5%
Sor-ACan_048-Ex1-12D-lcwgs-1-T	8.9%	95.9%	320.2	34.9%	95.1%	80.4%
Sor-ACan_049-Ex1-1E-lcwgs-1-T	8.1%	95.4%	416.6	35.8%	92.9%	76.7%
Sor-ACan_050-Ex1-2E-lcwgs-1-T	8.8%	95.7%	617.1	35.6%	94.8%	78.0%
Sor-ACan_051-Ex1-3E-lcwgs-1-T	8.7%	96.0%	464.9	36.5%	95.2%	81.9%
Sor-ACan_052-Ex1-4E-lcwgs-1-T	8.0%	96.2%	219.8	35.9%	95.8%	86.7%
Sor-ACan_053-Ex1-5E-lcwgs-1-T	8.5%	96.1%	372.1	37.3%	95.1%	84.4%
Sor-ACan_054-Ex1-6E-lcwgs-1-T	12.6%	91.9%	123.8	55.9%	95.2%	19.5%
Sor-ACan_055-Ex1-7E-lcwgs-1-T	8.6%	95.1%	1030.3	35.0%	96.7%	66.4%
Sor-ACeb_001-Ex1-8E-lcwgs-1-T	9.1%	95.6%	483.2	36.0%	95.7%	81.8%
Sor-ACeb_002-Ex1-9E-lcwgs-1-T	10.0%	95.0%	207.7	44.1%	92.5%	67.9%
Sor-ACeb_003-Ex1-10E-lcwgs-1-T	8.0%	97.3%	132.0	36.4%	97.0%	96.9%
Sor-ACeb_004-Ex1-11E-lcwgs-1-T	9.2%	96.4%	198.1	39.9%	91.9%	87.4%
Sor-ACeb_005-Ex1-12E-lcwgs-1-T	11.4%	92.9%	56.3	55.5%	93.2%	33.6%
Sor-ACeb_006-Ex1-1F-lcwgs-1-T	7.7%	95.7%	45.7	42.8%	90.6%	81.3%
Sor-ACeb_007-Ex1-2F-lcwgs-1-T	9.3%	96.2%	129.5	42.5%	90.6%	85.6%
Sor-ACeb_008-Ex1-3F-lcwgs-1-T	8.6%	97.0%	79.2	35.7%	95.1%	94.4%
Sor-ACeb_009-Ex1-4F-lcwgs-1-T	8.5%	97.5%	88.5	36.4%	96.5%	96.2%
Sor-ACeb_010-Ex1-5F-lcwgs-1-T	8.3%	96.5%	47.1	40.3%	92.6%	86.4%
Sor-ACeb_011-Ex1-6F-lcwgs-1-T	11.4%	92.4%	38.2	54.8%	94.9%	24.9%
Sor-ACeb_012-Ex1-7F-lcwgs-1-T	8.2%	96.7%	174.6	37.8%	93.0%	89.9%
Sor-ACeb_013-Ex1-8F-lcwgs-1-T	7.7%	92.4%	16.8	52.1%	94.3%	38.6%
Sor-ACeb_014-Ex1-9F-lcwgs-1-T	9.9%	94.0%	20.4	47.6%	95.3%	55.0%
Sor-ACeb_015-Ex1-10F-lcwgs-1-T	8.7%	96.0%	123.0	41.0%	92.3%	83.4%
Sor-ACeb_016-Ex1-11F-lcwgs-1-T	9.8%	95.8%	281.8	44.1%	92.3%	80.4%
Sor-ACeb_017-Ex1-12F-lcwgs-1-T	9.9%	96.4%	184.0	41.7%	86.7%	86.3%
Sor-ACeb_018-Ex1-1G-lcwgs-1-T	6.6%	95.2%	53.4	40.7%	94.5%	75.3%
Sor-ACeb_019-Ex1-3G-lcwgs-1-T	0.4%	94.0%	9.1	36.4%	95.0%	75.1%
Sor-ACeb_020-Ex1-2G-lcwgs-1-T	0.7%	94.0%	9.2	37.0%	94.5%	74.8%
Sor-ACeb_021-Ex1-4G-lcwgs-1-T	0.5%	94.2%	7.8	36.2%	95.2%	79.0%
Sor-ACeb_022-Ex1-5G-lcwgs-1-T	10.1%	93.1%	49.2	52.3%	95.7%	37.9%
Sor-CBur_001-Ex1-2C-lcwgs-1-T	8.2%	94.1%	686.9	39.0%	96.9%	49.3%
Sor-CBur_003-Ex1-1G-lcwgs-1-T	9.0%	93.9%	323.7	39.4%	96.0%	42.0%
Sor-CBur_004-Ex1-1H-lcwgs-1-T	9.5%	94.4%	343.2	39.3%	97.1%	52.9%
Sor-CBur_005-Ex1-8H-lcwgs-1-T	8.5%	93.8%	715.6	38.3%	96.7%	43.0%
Sor-CBur_009-Ex1-3H-lcwgs-1-T	9.2%	94.5%	719.3	39.0%	97.1%	58.9%
Sor-CBur_010-Ex1-2H-lcwgs-1-T	8.6%	93.9%	782.5	38.6%	97.1%	43.6%
Sor-CBur_011-Ex1-5F-lcwgs-1-T	9.1%	93.5%	1534.6	39.2%	96.3%	39.4%
Sor-CBur_012-Ex1-3E-lcwgs-1-T	9.0%	94.1%	1099.9	39.0%	96.4%	46.5%
Sor-CBur_013-Ex1-6B-lcwgs-1-T	8.2%	94.3%	679.6	38.6%	97.2%	54.0%
Sor-CBur_014-Ex1-6H-lcwgs-1-T	8.5%	95.2%	922.8	38.3%	97.4%	74.1%
Sor-CBur_015-Ex1-2D-lcwgs-1-T	8.4%	94.0%	766.5	38.8%	97.2%	41.1%
Sor-CBur_016-Ex1-6G-lcwgs-1-T	8.2%	94.5%	1307.1	38.7%	97.2%	54.0%
Sor-CBur_020-Ex1-7D-lcwgs-1-T	8.2%	94.6%	178.4	39.6%	96.5%	62.7%
Sor-CBur_021-Ex1-5C-lcwgs-1-T	8.6%	93.2%	653.7	39.5%	95.1%	33.9%
Sor-CBur_022-Ex1-1A-lcwgs-1-T	9.4%	93.6%	292.8	40.0%	95.8%	39.6%
Sor-CBur_023-Ex1-5E-lcwgs-1-T	8.8%	93.7%	1128.0	39.1%	96.6%	38.2%
Sor-CBur_025-Ex1-8B-lcwgs-1-T	8.0%	94.5%	451.2	38.5%	97.2%	59.8%
Sor-CBur_028-Ex1-2E-lcwgs-1-T	8.3%	93.9%	1035.2	38.7%	97.1%	39.1%
Sor-CBur_033-Ex1-3A-lcwgs-1-T	9.0%	94.1%	514.4	38.8%	96.7%	51.8%
Sor-CBur_034-Ex1-3C-lcwgs-1-T	8.9%	94.0%	525.1	39.1%	96.5%	47.7%
Sor-CBur_036-Ex1-3F-lcwgs-1-T	9.4%	93.8%	1162.2	39.3%	96.1%	42.2%
Sor-CBur_037-Ex1-5A-lcwgs-1-T	8.7%	94.4%	456.6	39.3%	97.0%	59.9%
Sor-CBur_040-Ex1-4B-lcwgs-1-T	8.5%	93.6%	544.9	39.2%	96.2%	39.7%
Sor-CBur_041-Ex1-7F-lcwgs-1-T	8.8%	94.2%	262.4	39.5%	96.0%	47.6%
Sor-CBur_042-Ex1-6C-lcwgs-1-T	8.1%	94.3%	603.0	38.8%	97.1%	55.7%
Sor-CBur_043-Ex1-1B-lcwgs-1-T	9.3%	93.9%	155.5	40.3%	95.7%	44.5%
Sor-CBur_044-Ex1-6A-lcwgs-1-T	8.2%	94.7%	566.3	38.6%	91.4%	65.2%
Sor-CBur_046-Ex1-2A-lcwgs-1-T	8.4%	93.4%	760.6	39.0%	96.1%	36.9%
Sor-CBur_049-Ex1-7B-lcwgs-1-T	8.5%	94.5%	151.6	40.0%	96.2%	58.1%
Sor-CBur_050-Ex1-6D-lcwgs-1-T	8.5%	94.3%	1284.0	38.5%	97.2%	53.9%
Sor-CBur_051-Ex1-8D-lcwgs-1-T	8.3%	94.9%	1057.8	38.8%	96.6%	67.3%
Sor-CBur_052-Ex1-5B-lcwgs-1-T	8.2%	92.9%	306.3	40.0%	94.3%	35.4%
Sor-CBur_053-Ex1-8F-lcwgs-1-T	8.5%	95.0%	1073.3	38.7%	96.8%	67.9%
Sor-CBur_054-Ex1-7A-lcwgs-1-T	8.5%	96.4%	137.0	41.8%	97.5%	85.8%
Sor-CBur_055-Ex1-2G-lcwgs-1-T	8.1%	93.9%	894.4	38.7%	96.7%	39.4%
Sor-CBur_058-Ex1-8C-lcwgs-1-T	8.0%	94.9%	509.0	38.6%	97.6%	64.3%
Sor-CBur_059-Ex1-3G-lcwgs-1-T	7.7%	94.8%	269.5	40.0%	95.4%	63.6%
Sor-CBur_062-Ex1-6E-lcwgs-1-T	8.4%	94.5%	1565.6	38.5%	97.5%	54.0%
Sor-CBur_064-Ex1-4D-lcwgs-1-T	8.4%	94.0%	546.1	39.1%	96.6%	46.7%
Sor-CBur_065-Ex1-1F-lcwgs-1-T	9.2%	94.2%	173.9	39.5%	96.5%	48.3%
Sor-CBur_066-Ex1-3B-lcwgs-1-T	9.1%	93.5%	709.7	39.4%	95.5%	39.5%
Sor-CBur_067-Ex1-4H-lcwgs-1-T	8.4%	94.6%	380.7	39.0%	97.3%	61.8%
Sor-CBur_068-Ex1-6F-lcwgs-1-T	8.7%	94.5%	1500.4	38.6%	97.3%	56.5%
Sor-CBur_069-Ex1-5D-lcwgs-1-T	8.3%	94.2%	517.8	39.3%	96.5%	51.0%
Sor-CBur_070-Ex1-1E-lcwgs-1-T	9.2%	94.2%	247.0	39.9%	96.5%	44.7%
Sor-CBur_071-Ex1-4G-lcwgs-1-T	8.4%	94.2%	1046.7	38.7%	96.9%	47.6%
Sor-CBur_073-Ex1-7H-lcwgs-1-T	8.7%	94.7%	163.9	39.1%	97.0%	62.2%
Sor-CBur_075-Ex1-5H-lcwgs-1-T	8.8%	94.4%	472.0	39.0%	97.1%	56.1%
Sor-CBur_076-Ex1-2B-lcwgs-1-T	7.9%	93.3%	321.0	39.1%	96.0%	35.2%
Sor-CBur_077-Ex1-8E-lcwgs-1-T	8.1%	94.8%	910.9	38.3%	97.6%	61.4%
Sor-CBur_078-Ex1-5G-lcwgs-1-T	8.6%	93.8%	1071.3	38.9%	96.5%	39.2%
Sor-CBur_079-Ex1-8G-lcwgs-1-T	8.1%	94.4%	1328.4	38.4%	96.7%	56.6%
Sor-CBur_080-Ex1-2F-lcwgs-1-T	8.4%	93.4%	852.5	39.1%	95.7%	34.4%
Sor-CBur_081-Ex1-8A-lcwgs-1-T	8.0%	95.1%	375.5	39.0%	97.4%	69.0%
Sor-CBur_082-Ex1-4C-lcwgs-1-T	8.4%	93.7%	516.9	39.0%	96.2%	42.4%
Sor-CBur_084-Ex1-4A-lcwgs-1-T	8.5%	94.2%	453.2	39.3%	97.0%	51.7%
Sor-CBur_085-Ex1-7E-lcwgs-1-T	8.4%	94.6%	192.1	39.5%	96.5%	56.7%
Sor-CBur_086-Ex1-1D-lcwgs-1-T	8.6%	94.2%	87.7	39.8%	96.0%	49.5%
Sor-CBur_087-Ex1-1C-lcwgs-1-T	8.6%	94.0%	90.1	39.8%	95.7%	48.3%
Sor-CBur_088-Ex1-4F-lcwgs-1-T	8.5%	94.4%	502.5	39.6%	96.9%	56.1%
Sor-CBur_089-Ex1-4E-lcwgs-1-T	8.3%	94.3%	643.1	39.0%	96.6%	51.2%
Sor-CBur_091-Ex1-7C-lcwgs-1-T	8.4%	94.2%	185.0	39.8%	96.2%	52.2%
Sor-CBur_093-Ex1-7G-lcwgs-1-T	8.0%	94.5%	235.7	39.5%	95.7%	54.9%
Sor-CBur_096-Ex1-3D-lcwgs-1-T	9.1%	93.7%	700.8	39.5%	96.5%	39.9%
Sor-CPnd_001-Ex1-3E-lcwgs-1-T	7.6%	94.6%	568.3	38.3%	97.7%	58.5%
Sor-CPnd_002-Ex1-5E-lcwgs-1-T	8.0%	94.6%	581.8	38.7%	97.6%	59.4%
Sor-CPnd_003-Ex1-2B-lcwgs-1-T	8.6%	94.0%	812.4	39.2%	97.1%	46.8%
Sor-CPnd_004-Ex1-1G-lcwgs-1-T	7.4%	94.4%	838.3	38.4%	97.5%	56.8%
Sor-CPnd_005-Ex1-3D-lcwgs-1-T	8.3%	93.7%	523.6	38.6%	97.1%	39.8%
Sor-CPnd_006-Ex1-2D-lcwgs-1-T	8.4%	94.4%	664.4	38.7%	97.4%	56.9%
Sor-CPnd_007-Ex1-1C-lcwgs-1-T	7.6%	93.4%	676.9	40.3%	96.2%	39.6%
Sor-CPnd_008-Ex1-1A-lcwgs-1-T	8.3%	90.8%	1269.3	39.4%	93.4%	8.6%
Sor-CPnd_009-Ex1-6A-lcwgs-1-T	9.5%	94.1%	1101.0	39.8%	96.8%	45.3%
Sor-CPnd_010-Ex1-1H-lcwgs-1-T	8.0%	93.8%	1083.1	38.8%	97.2%	43.9%
Sor-CPnd_011-Ex1-8D-lcwgs-1-T	7.8%	94.4%	406.8	38.8%	96.9%	57.3%
Sor-CPnd_012-Ex1-5B-lcwgs-1-T	8.4%	93.7%	500.1	39.0%	96.4%	43.1%
Sor-CPnd_013-Ex1-7F-lcwgs-1-T	7.1%	94.4%	483.5	38.7%	96.7%	56.9%
Sor-CPnd_014-Ex1-1F-lcwgs-1-T	7.6%	94.4%	677.5	38.9%	97.5%	57.3%
Sor-CPnd_015-Ex1-5F-lcwgs-1-T	8.4%	94.2%	594.9	38.9%	96.9%	51.0%
Sor-CPnd_016-Ex1-1B-lcwgs-1-T	7.6%	92.2%	774.8	39.5%	95.0%	19.9%
Sor-CPnd_017-Ex1-3G-lcwgs-1-T	7.9%	94.5%	670.0	37.9%	97.5%	55.3%
Sor-CPnd_018-Ex1-1E-lcwgs-1-T	7.6%	94.4%	933.1	38.5%	97.6%	53.2%
Sor-CPnd_019-Ex1-6G-lcwgs-1-T	8.5%	94.3%	597.4	38.8%	96.9%	55.7%
Sor-CPnd_020-Ex1-2E-lcwgs-1-T	8.3%	94.4%	806.2	38.3%	97.6%	54.0%
Sor-CPnd_021-Ex1-4D-lcwgs-1-T	7.8%	94.4%	326.8	38.5%	97.3%	58.3%
Sor-CPnd_022-Ex1-7C-lcwgs-1-T	7.8%	93.8%	684.9	38.6%	96.2%	46.0%
Sor-CPnd_023-Ex1-4A-lcwgs-1-T	8.1%	94.0%	458.8	39.0%	96.8%	47.6%
Sor-CPnd_024-Ex1-5G-lcwgs-1-T	7.8%	94.3%	481.3	38.2%	97.1%	51.5%
Sor-CPnd_025-Ex1-4B-lcwgs-1-T	8.0%	93.9%	401.6	39.2%	96.8%	46.9%
Sor-CPnd_026-Ex1-3H-lcwgs-1-T	8.5%	94.1%	501.0	38.5%	97.2%	48.4%
Sor-CPnd_027-Ex1-3C-lcwgs-1-T	8.4%	93.5%	570.3	38.8%	96.7%	35.4%
Sor-CPnd_028-Ex1-3A-lcwgs-1-T	8.4%	93.3%	598.9	39.1%	96.3%	37.7%
Sor-CPnd_029-Ex1-8E-lcwgs-1-T	7.8%	94.3%	861.7	38.0%	97.2%	52.4%
Sor-CPnd_030-Ex1-2H-lcwgs-1-T	8.8%	94.3%	530.8	38.6%	97.4%	53.1%
Sor-CPnd_031-Ex1-5D-lcwgs-1-T	8.4%	94.2%	712.1	38.7%	97.3%	46.9%
Sor-CPnd_032-Ex1-4F-lcwgs-1-T	7.6%	94.8%	405.8	38.4%	97.3%	62.7%
Sor-CPnd_033-Ex1-2F-lcwgs-1-T	8.7%	94.3%	755.5	38.0%	97.5%	50.4%
Sor-CPnd_034-Ex1-4G-lcwgs-1-T	7.6%	94.4%	574.6	38.6%	97.1%	54.8%
Sor-CPnd_035-Ex1-4C-lcwgs-1-T	8.0%	93.9%	393.3	38.7%	96.2%	48.7%
Sor-CPnd_036-Ex1-5C-lcwgs-1-T	8.4%	94.3%	578.6	38.4%	96.4%	54.4%
Sor-CPnd_037-Ex1-6C-lcwgs-1-T	9.2%	93.6%	717.0	38.8%	94.4%	43.0%
Sor-CPnd_038-Ex1-2A-lcwgs-1-T	8.6%	93.3%	597.2	38.9%	96.3%	34.5%
Sor-CPnd_039-Ex1-5H-lcwgs-1-T	8.4%	94.3%	425.3	38.6%	96.4%	56.0%
Sor-CPnd_040-Ex1-6F-lcwgs-1-T	5.4%	94.2%	131.3	38.0%	96.3%	62.1%
Sor-CPnd_041-Ex1-7A-lcwgs-1-T	8.0%	95.4%	558.3	40.1%	97.0%	64.5%
Sor-CPnd_042-Ex1-4E-lcwgs-1-T	7.5%	94.5%	420.6	38.3%	97.2%	58.7%
Sor-CPnd_043-Ex1-1D-lcwgs-1-T	7.6%	93.8%	685.3	38.7%	96.8%	43.6%
Sor-CPnd_044-Ex1-8G-lcwgs-1-T	7.4%	94.4%	626.3	38.2%	96.7%	56.1%
Sor-CPnd_045-Ex1-7B-lcwgs-1-T	7.9%	93.4%	708.2	38.9%	95.9%	40.1%
Sor-CPnd_046-Ex1-5A-lcwgs-1-T	8.6%	94.5%	657.1	38.9%	96.5%	53.0%
Sor-CPnd_047-Ex1-4H-lcwgs-1-T	8.1%	94.3%	412.7	38.3%	96.8%	56.9%
Sor-CPnd_048-Ex1-8A-lcwgs-1-T	7.9%	94.2%	343.5	39.4%	95.5%	50.2%
Sor-CPnd_049-Ex1-3B-lcwgs-1-T	8.5%	93.6%	537.6	38.4%	96.9%	40.6%
Sor-CPnd_050-Ex1-3F-lcwgs-1-T	8.6%	94.3%	753.4	38.6%	97.4%	52.0%
Sor-CPnd_051-Ex1-6H-lcwgs-1-T	8.2%	94.0%	302.5	38.4%	96.1%	50.4%
Sor-CPnd_052-Ex1-6D-lcwgs-1-T	8.3%	94.8%	906.7	37.9%	97.1%	62.1%
Sor-CPnd_053-Ex1-2C-lcwgs-1-T	8.4%	93.7%	510.7	38.9%	96.6%	42.0%
Sor-CPnd_054-Ex1-8F-lcwgs-1-T	8.3%	94.5%	804.3	38.9%	96.6%	55.4%
Sor-CPnd_055-Ex1-7G-lcwgs-1-T	6.7%	94.5%	562.5	37.7%	96.6%	59.4%
Sor-CPnd_056-Ex1-7E-lcwgs-1-T	6.0%	94.3%	248.5	37.9%	96.7%	59.7%
Sor-CPnd_057-Ex1-6E-lcwgs-1-T	7.1%	94.6%	218.4	38.1%	97.0%	63.9%
Sor-CPnd_058-Ex1-2G-lcwgs-1-T	8.3%	94.4%	804.9	37.6%	97.5%	52.9%
Sor-CPnd_060-Ex1-7H-lcwgs-1-T	6.8%	93.7%	225.6	38.5%	95.1%	48.3%
Sor-CPnd_063-Ex1-7D-lcwgs-1-T	7.2%	94.6%	574.5	38.3%	97.1%	59.0%
Sor-CPnd_066-Ex1-8B-lcwgs-1-T	8.0%	93.7%	475.5	38.8%	95.8%	44.6%
Sor-CPnd_068-Ex1-8H-lcwgs-1-T	7.7%	93.9%	325.3	38.4%	95.5%	49.8%
Sor-CPnd_069-Ex1-6B-lcwgs-1-T	9.1%	93.4%	526.2	39.3%	95.5%	40.5%
Sor-CPnd_072-Ex1-8C-lcwgs-1-T	8.0%	93.2%	806.4	39.0%	95.5%	35.8%

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Sort	Group	Column	Description	ID	Scale
\|\|	fastp	% Duplication	Duplication rate before filtering	`pct_duplication`	None
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`after_filtering_q30_rate`	None
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`after_filtering_q30_bases`	base_count
\|\|	fastp	GC content	GC content after filtering	`after_filtering_gc_content`	None
\|\|	fastp	% PF	Percent reads passing filter	`pct_surviving`	None
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`pct_adapter`	None

fastp

fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

Filtered Reads

Filtering statistics of sampled reads.

Duplication Rates

Duplication rates of sampled reads.

Insert Sizes

Insert size estimation of sampled reads.

Sequence Quality

Average sequencing quality over each base of all reads.

GC Content

Average GC content over each base of all reads.

N content

Average N content over each base of all reads.

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